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Test Versioning/Changelog

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---
layout: default
title: Contributing
has_children: false
nav_order: 8
---
## Description of this repository
This repository contains the Data Management Plan (DMP) for [Latin American Giant Observatory (LAGO)](http://lagoproject.net/) Collaboration. It is a dynamic document that describes data, metadata, and how they are produced, accessed and managed:
[https://lagoproject.github.io/DMP/](https://lagoproject.github.io/DMP/)
## Contributing
- All LAGO members can contribute to the *dev* branch of DMP through pull requests.
- Members of standardisation group can authorise pull requests to the *dev* branch, but not `merge` their own modifications to the *master* branch without an additional authorisation.
- Only managers or administrators of the repository can directly `merge` the contribution to the *master* branch and publish stable releases.
## License
All contents of this repository are under the terms of the Creative Common [CC BY-NC-SA 4.0](./LICENSE) license, with exception of some code needed for rendering the web page, which has its own license declared at the head of the code.
# Minimun config
title: "LAGO Data Management Plan"
remote_theme: pmarsceill/just-the-docs
# Color scheme supports "light" (default) and "dark"
color_scheme: "light"
# logo: "/images/lago.png"
# baseurl: "/DMP" # the subpath of your site, e.g. /blog
# url: "https://lagoproject.github.io/DMP" # the base hostname & protocol for your site, e.g. http://example.com
permalink: pretty
# exclude: ["node_modules/", "*.gemspec", "*.gem", "Gemfile", "Gemfile.lock", "package.json", "package-lock.json", "script/", "LICENSE.txt", "lib/", "bin/", "README.md", "Rakefile", "docs/tests/"]
# Regression tests
# By default, the pages in /docs/tests are excluded when the ste is built.
# To include them, comment-out the relevant line above.
# Uncommenting the following line doesn't work - see https://github.com/jekyll/jekyll/issues/4791
# include: ["docs/tests/"]
#
#
# Enable or disable the site search
# Supports true (default) or false
search_enabled: true
search:
# Split pages into sections that can be searched individually
# Supports 1 - 6, default: 2
heading_level: 2
# Maximum amount of previews per search result
# Default: 3
previews: 3
# Maximum amount of words to display before a matched word in the preview
# Default: 5
preview_words_before: 5
# Maximum amount of words to display after a matched word in the preview
# Default: 10
preview_words_after: 10
# Set the search token separator
# Default: /[\s\-/]+/
# Example: enable support for hyphenated search words
tokenizer_separator: /[\s/]+/
# Display the relative url in search results
# Supports true (default) or false
rel_url: true
# Enable or disable the search button that appears in the bottom right corner of every page
# Supports true or false (default)
button: false
#
#
# Aux links for the upper right navigation
aux_links:
"LAGO DMP on GitHub":
- "https://github.com/lagoproject/DMP/"
# Makes Aux links open in a new tab. Default is false
aux_links_new_tab: false
#
#
# Heading anchor links appear on hover over h1-h6 tags in page content
# allowing users to deep link to a particular heading on a page.
# Supports true (default) or false
heading_anchors: true
#
# Footer content
# appears at the bottom of every page's main content
footer_content: "Copyright &copy; 2020, The LAGO Collaboration. Distributed by an <a href=\"https://github.com/lagoproject/DMP/tree/master/LICENSE\">CC BY-NC-SA 4.0</a>"
# Footer last edited timestamp
last_edit_timestamp: true # show or hide edit time - page must have `last_modified_date` defined in the frontmatter
last_edit_time_format: "%b %e %Y at %I:%M %p" # uses ruby's time format: https://ruby-doc.org/stdlib-2.7.0/libdoc/time/rdoc/Time.html
# Footer "Edit this page on GitHub" link text
gh_edit_link: true # show or hide edit this page link
gh_edit_link_text: "Edit this page on GitHub."
gh_edit_repository: "https://github.com/lagoproject/DMP/" # the github URL for your repo
gh_edit_branch: "develop" # the branch that your docs is served from
# gh_edit_source: docs # the source that your files originate from
gh_edit_view_mode: "tree" # "tree" or "edit" if you want the user to jump into the editor immediately
#
#
# Google Analytics Tracking (optional)
# e.g, UA-1234567-89
# ga_tracking: UA-5555555-55
# ga_tracking_anonymize_ip: true # Use GDPR compliant Google Analytics settings (true by default)
#
#
# Define Jekyll collections
# collections:
# Define a collection named "docs", its documents reside in the "_docs" directory
#docs:
# permalink: "/:collection/:path/"
# output: true
# just_the_docs:
# Define which collections are used in just-the-docs
#collections:
# # Reference the "docs" collection
# docs:
# # Give the collection a name
# name: Documentation
# # Exclude the collection from the navigation
# # Supports true or false (default)
# nav_exclude: false
# # Exclude the collection from the search
# # Supports true or false (default)
# search_exclude: false
<!--
################################################################################
# Original Author: A.J. Rubio-Montero (http://orcid.org/0000-0001-6497-753X), #
# CIEMAT - Sci-Track Group (http://rdgroups.ciemat.es/web/sci-track), #
# for the EOSC-Synergy project (EU H2020 RI Grant No 857647). #
# License (SPDX): BSD-3-Clause (https://opensource.org/licenses/BSD-3-Clause) #
# Copyright (c): 2020-today, The LAGO Collaboration (http://lagoproject.net) #
################################################################################
-->
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{% if include.vocabulary == "true" %}
- [**Classes**](#classes)
<ul id="iclasses"></ul>
- [**Properties**](#properties)
<ul id="iproperties"></ul>
### Classes
<div id="classes"></div>
### Properties
<div id="properties"></div>
{% else %}
- [**Official LAGO sites**](#lago)
<ul id="iproperties"></ul>
- [**non-LAGO sites**](#non-lago)
<ul id="iclasses"></ul>
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<div id="properties"></div>
### non-LAGO sites
<div id="classes"></div>
{% endif %}
<!--
################################################################################
# Original Author: A.J. Rubio-Montero (http://orcid.org/0000-0001-6497-753X), #
# CIEMAT - Sci-Track Group (http://rdgroups.ciemat.es/web/sci-track), #
# for the EOSC-Synergy project (EU H2020 RI Grant No 857647). #
# License (SPDX): BSD-3-Clause (https://opensource.org/licenses/BSD-3-Clause) #
# Copyright (c): 2020-today, The LAGO Collaboration (http://lagoproject.net) #
################################################################################
-->
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<script>
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### Classes
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### Properties
<div id="properties"></div>
{% else %}
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<ul id="iclasses"></ul>
### Items
<div id="classes"></div>
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\ No newline at end of file
---
layout: default
title: Definitions
has_children: true
permalink: /defs/
nav_order: 4
---
# Established definitions
This section fixes the definition of certain LAGO actors following the [metadata schema](/schema/lagoSchema). The objective is to allow linking metadata with public URIs.
{
"TBD" : "TBD."
}
---
layout: default
parent: Definitions
nav_order: 2
---
# LAGO Collaboration
{: .no_toc }
|Version| Updated | Date |Contributors|
|-------|---------|------|------------|
| 1.1 develop | {{ site.time }} | 2020-06-01 - today | LAGO Collaboration |
## Table of contents
{: .no_toc .text-delta }
- TOC
{:toc}
## What is defined?
[lagoCollaboration.jsonld](./lagoCollaboration.jsonld) unifies the definition of the LAGO Collaboration following the official LAGO schema vocabulary.
The purpose of the definition is to univocally identify the LAGO Collaboration employing a public URI for being linked by any metadata.
## How should an item be referenced?
To preserve the provenance of the linked metadata through time, the GitHub raw link of a certain release of this document must be used:
`https://raw.githubusercontent.com/lagoproject/DMP/`*\<tag release\>*`/defs/lagoCollaboration.jsonld`
For example:
[https://raw.githubusercontent.com/lagoproject/DMP/1.1/defs/lagoCollaboration.jsonld](https://raw.githubusercontent.com/lagoproject/DMP/1.1/defs/lagoCollaboration.jsonld)
As a real example, the metadata´s catalog of a simulation should include the reference to the [DCAT-AP2](https://joinup.ec.europa.eu/collection/semantic-interoperability-community-semic/solution/dcat-application-profile-data-portals-europe) property [publisher](https://raw.githubusercontent.com/SEMICeu/DCAT-AP/2.0.0/releases/2.0.0/dcat-ap_2.0.0.jsonld#publisher):
```json
{
"@context":{
...
"lago":"https://raw.githubusercontent.com/lagoproject/DMP/1.1/schema/lagoSchema.jsonld",
"@vocab":"https://raw.githubusercontent.com/SEMICeu/DCAT-AP/2.0.0/releases/2.0.0/dcat-ap_2.0.0.jsonld",
...
},
"@id":"/sac_60_100.0_75600_QGSII_flat",
"@type":"Catalog",
"title":"sac_60_100.0_75600_QGSII_flat",
"description":"A Complete Corsika Simulation",
"publisher":{
"@id":"https://raw.githubusercontent.com/lagoproject/DMP/1.1/defs/lagoCollaboration.jsonld",
"@type":"lago:Organization"
},
...
...
```
## Plain JSON-LD file
```json
{% include_relative lagoCollaboration.jsonld %}
```
This diff is collapsed.
---
layout: default
parent: Definitions
nav_order: 1
---
# LAGO sites
{: .no_toc }
|Version| Updated | Date |Contributors|
|-------|---------|------|------------|
| 1.1 develop | {{ site.time }} | 2020-06-01 - today | LAGO Collaboration |
## Table of contents
{: .no_toc .text-delta }
- TOC
{:toc}
## What is defined?
[sitesLago.jsonld](./sitesLago.jsonld) unifies the definition of the LAGO sites following the official LAGO schema vocabulary.
The purpose of the site's definition is:
- to univocally identify a predefined LAGO site (real or virtual) to be linked by metadata using a public URI;
- to link several related definitions of the site: short codename, name, description, responsible organisation;
- to fix their location, i.e. magnetic field, observation level, GPS coordinates;
- to provide other default configuration parameters, meaningful for applications such as the `arrang` [(ARTI)](https://github.com/lagoproject/arti), `status` [(locationMaps)](https://github.com/lagoproject/locationsMaps), etc.
Note that the sites give support or have given support (physically or virtually) to one or several Water Cherenkov Detectors (WCDs). Their definitions should not be included in this document, conversely, it is the WCD definition that should be linked to a LAGO site.
## How should an item be referenced?
To preserve the provenance of the linked metadata through time, you must use the GitHub raw link to a certain release of this document, plus `#` and the short site codename:
`https://raw.githubusercontent.com/lagoproject/DMP/`*\<tag release\>*`/defs/sitesLago.jsonld`*#\<site codename\>*
For example:
[https://raw.githubusercontent.com/lagoproject/DMP/1.1/defs/sitesLago.jsonld#sac](https://raw.githubusercontent.com/lagoproject/DMP/1.1/defs/sitesLago.jsonld#sac)
As a real example, the metadata´s catalog of a simulation should include the site´s reference:
```json
{
"@context":{
...
"lago":"https://raw.githubusercontent.com/lagoproject/DMP/1.1/schema/lagoSchema.jsonld",
...
},
...
...
{
"@id":"/sac_60_100.0_75600_QGSII_flat#artiParams",
"@type":"lago:ArtiParams",
"lago:cherenkov":False,
"lago:debug":False,
"lago:highEnergyIntModel":"QGSII",
"lago:detectorSite":"https://raw.githubusercontent.com/lagoproject/DMP/1.1/defs/sitesLago.jsonld#sac",
"lago:obsLev":100,
"lago:highEnergyCutsSecondaries": False,
"lago:fluxTime":"Psac_60_100.0_75600_QGSII_flatS",
"lago:flatArray":True
},
...
...
```
## Defined LAGO sites
{% include generate_html_for_sites.html folder="/DMP/defs/sitesLago.jsonld" %}
## Plain JSON-LD file
```json
{% include_relative sitesLago.jsonld %}
```
---
layout: default
title: Architecture
has_children: true
permalink: /Architecture/
nav_order: 6
---
# Architecture
---
layout: default
parent: HowTo's
nav_order: 3
---
# How to enrol a OneData provider
TBD.
## etc...
TBD.
---
layout: default
parent: HowTo's
nav_order: 1
---
# How to Join to LAGO Virtual Organisation
## Table of contents
{: .no_toc}
- TOC
{:toc}
## Introduction
https://wiki.geant.org/display/eduTEAMS/Services
## Registering as a new user on the eduTEAMS Service
*(This subsection is copied from the work of Christos Kanellopoulos as eduTEAMs responsible at [https://wiki.geant.org/display/eduTEAMS/Registering+as+a+new+user+on+the+eduTEAMS+Service](https://wiki.geant.org/display/eduTEAMS/Registering+as+a+new+user+on+the+eduTEAMS+Service))*.
Before joining LAGO you must register in eduTeams. The procedure is as follows:
{% assign i = 0 %}
1. To get started with eduTEAMS, all users, regardless of their role, need to register on the eduTEAMS Service at [https://www.eduteams.org/#join](https://www.eduteams.org/#join).{% assign i = i | plus: 1 %}![https://lagoproject.github.io/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png](/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png)
1. When you click the "JOIN" button, you will be presented with a screen on which you will have to select your organisation's Identity Provider where you will be authenticated. If your organisation is not listed, you might want to search/choose "ORCID" or "Google".{% assign i = i | plus: 1 %}![https://lagoproject.github.io/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png](/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png)
1. You will be redirected to the Identity Provider you have selected. After you have been successfully authenticated, you will be redirected to the eduTEAMS Registration Form, where you have to fill the data. The fields Name and E-mail are pre-filled, based on your account attributes. The field Username should be added and will be used as eduTEAMS nickname.{% assign i = i | plus: 1 %}![https://lagoproject.github.io/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png](/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png)
1. Read carefully the Acceptable Usage Policy. To register on eduTEAMS Service you have to click on the "I agree" checkbox and on the "Submit" button.{% assign i = i | plus: 1 %}![https://lagoproject.github.io/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png](/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png)
1. Congratulations! You have successfully registered on the eduTEAMS Service. Click on the "Continue" button and you will be redirected to your eduTEAMS Profile page. You can access your profile page on the eduTEAMS Service at any time by visiting [https://mms.eduteams.org/profile/](https://mms.eduteams.org/profile/)
{% assign i = i | plus: 1 %}
![https://lagoproject.github.io/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png](/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png)
Now, you are registered on the eduTEAMS Service, but to access the LAGO services **you must also join some group in the LAGO Virtual Organization**. See the next section.
## Applying to a LAGO group
Every collaborator should belong to some LAGO scientific group. To apply for one you should follow the link:
``https://mms.eduteams.org/fed/registrar/?vo=LAGO-AAI&group=<GROUP>``
The collaborations are mainly distributed by countries, where every person corresponds to one group:
{% assign countries = "argentina, colombia, spain" | split: ", " %}
{% for c in countries %}
- {{c}} : [https://mms.eduteams.org/fed/registrar/?vo=LAGO-AAI&group={{c}}](https://mms.eduteams.org/fed/registrar/?vo=LAGO-AAI&group={{c}})
{% endfor %}
For example, after following the corresponding link, you must accept the AUP clauses of LAGO collaboration (also updated on this [page](/DMP/rights/AUP/)):
{% assign i = i | plus: 1 %}
![https://lagoproject.github.io/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png](/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png)
Then, eduTEAMS informs you that the application was sent and is waiting for approval:
{% assign i = i | plus: 1 %}
![https://lagoproject.github.io/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png](/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png)
You can also see that there are two pending registrations, one for the main LAGO-AAI virtual organisation (VO) and other for the group for which you have applied:
{% assign i = i | plus: 1 %}
![https://lagoproject.github.io/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png](/DMP/docs/howtos/how_to_join_LAGO_VO_img/RegistrationLAGO{{i}}.png)
The result (accepted or not) will be notified by email.
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